PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022234.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 254aa    MW: 28733.6 Da    PI: 8.1765
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022234.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20138172135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  CCG022234.1 138 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 172
                  ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.5E-20132184IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.89132168IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-13135176No hitNo description
Gene3DG3DSA:3.30.50.106.0E-17136172IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.19E-12137169No hitNo description
PfamPF003205.8E-18138172IPR000679Zinc finger, GATA-type
PROSITE patternPS003440138163IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMHRCSSSHC NMVGPCSCSM YHTQNNSFSM LFSMPNHHKS FDETDMYPVT SPSSSVDCTL  60
SLGTPSTRLS EDDEKRTRHD QRRSGSCMSN FCWDILQTKN NSTPYPPQAH KTSRGNSNTS  120
HNSNNNLANN DPLLARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRATAANAN  180
NASASGAMEQ HYGYHQNNSW VQTQKMPCFS PANEFRFIED NDRDSDTGNN IPFLSWRLNV  240
TDRPSQLVHD FTRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025798.10.0PREDICTED: GATA transcription factor 18
SwissprotQ8LC791e-68GAT18_ARATH; GATA transcription factor 18
TrEMBLB9HF070.0B9HF07_POPTR; MONOPOLE family protein
STRINGPOPTR_0007s12930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.17e-63GATA family protein